The Municipality runs a tertiary level municipal hospital and hosts the province-owned Kapatagan District Hospital serving not only the residents of Kapatagan but those of neighboring towns like Sapad, Lala and Sultan Naga Dinaporo in Lanao del Norte and some residents from Aurora in Zamboanga del Sur.

Augmenting the demands of over 200 thousand clienteles from these areas are privately-owned hospitals like Gatchialian, Yu and  Cruz hospitals.